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  3. Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
 

Challenges of COVID-19 Case Forecasting in the US, 2020-2021.

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BORIS DOI
10.48350/196576
Date of Publication
May 2024
Publication Type
Article
Division/Institute

Institut für Mathemat...

Contributor
Lopez, Velma K
Cramer, Estee Y
Pagano, Robert
Drake, John M
O'Dea, Eamon B
Adee, Madeline
Ayer, Turgay
Chhatwal, Jagpreet
Dalgic, Ozden O
Ladd, Mary A
Linas, Benjamin P
Mueller, Peter P
Xiao, Jade
Bracher, Johannes
Castro Rivadeneira, Alvaro J
Gerding, Aaron
Gneiting, Tilmann
Huang, Yuxin
Jayawardena, Dasuni
Kanji, Abdul H
Le, Khoa
Mühlemann, Anja
Institut für Mathematische Statistik und Versicherungslehre (IMSV)
Mathematisches Institut (MAI)
Niemi, Jarad
Ray, Evan L
Stark, Ariane
Wang, Yijin
Wattanachit, Nutcha
Zorn, Martha W
Pei, Sen
Shaman, Jeffrey
Yamana, Teresa K
Tarasewicz, Samuel R
Wilson, Daniel J
Baccam, Sid
Gurung, Heidi
Stage, Steve
Suchoski, Brad
Gao, Lei
Gu, Zhiling
Kim, Myungjin
Li, Xinyi
Wang, Guannan
Wang, Lily
Wang, Yueying
Yu, Shan
Gardner, Lauren
Jindal, Sonia
Marshall, Maximilian
Nixon, Kristen
Dent, Juan
Hill, Alison L
Kaminsky, Joshua
Lee, Elizabeth C
Lemaitre, Joseph C
Lessler, Justin
Smith, Claire P
Truelove, Shaun
Kinsey, Matt
Mullany, Luke C
Rainwater-Lovett, Kaitlin
Shin, Lauren
Tallaksen, Katharine
Wilson, Shelby
Karlen, Dean
Castro, Lauren
Fairchild, Geoffrey
Michaud, Isaac
Osthus, Dave
Bian, Jiang
Cao, Wei
Gao, Zhifeng
Lavista Ferres, Juan
Li, Chaozhuo
Liu, Tie-Yan
Xie, Xing
Zhang, Shun
Zheng, Shun
Chinazzi, Matteo
Davis, Jessica T
Mu, Kunpeng
Pastore Y Piontti, Ana
Vespignani, Alessandro
Xiong, Xinyue
Walraven, Robert
Chen, Jinghui
Gu, Quanquan
Wang, Lingxiao
Xu, Pan
Zhang, Weitong
Zou, Difan
Gibson, Graham Casey
Sheldon, Daniel
Srivastava, Ajitesh
Adiga, Aniruddha
Hurt, Benjamin
Kaur, Gursharn
Lewis, Bryan
Marathe, Madhav
Peddireddy, Akhil Sai
Porebski, Przemyslaw
Venkatramanan, Srinivasan
Wang, Lijing
Prasad, Pragati V
Walker, Jo W
Webber, Alexander E
Slayton, Rachel B
Biggerstaff, Matthew
Reich, Nicholas G
Johansson, Michael A
Subject(s)

300 - Social sciences...

500 - Science::510 - ...

Series
PLoS computational biology
ISSN or ISBN (if monograph)
1553-734X
Publisher
Public Library of Science
Language
English
Publisher DOI
10.1371/journal.pcbi.1011200
PubMed ID
38709852
Description
During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and response was a priority for scientists and decision makers alike. In the United States, COVID-19 forecasting was coordinated by a large group of universities, companies, and government entities led by the Centers for Disease Control and Prevention and the US COVID-19 Forecast Hub (https://covid19forecasthub.org). We evaluated approximately 9.7 million forecasts of weekly state-level COVID-19 cases for predictions 1-4 weeks into the future submitted by 24 teams from August 2020 to December 2021. We assessed coverage of central prediction intervals and weighted interval scores (WIS), adjusting for missing forecasts relative to a baseline forecast, and used a Gaussian generalized estimating equation (GEE) model to evaluate differences in skill across epidemic phases that were defined by the effective reproduction number. Overall, we found high variation in skill across individual models, with ensemble-based forecasts outperforming other approaches. Forecast skill relative to the baseline was generally higher for larger jurisdictions (e.g., states compared to counties). Over time, forecasts generally performed worst in periods of rapid changes in reported cases (either in increasing or decreasing epidemic phases) with 95% prediction interval coverage dropping below 50% during the growth phases of the winter 2020, Delta, and Omicron waves. Ideally, case forecasts could serve as a leading indicator of changes in transmission dynamics. However, while most COVID-19 case forecasts outperformed a naïve baseline model, even the most accurate case forecasts were unreliable in key phases. Further research could improve forecasts of leading indicators, like COVID-19 cases, by leveraging additional real-time data, addressing performance across phases, improving the characterization of forecast confidence, and ensuring that forecasts were coherent across spatial scales. In the meantime, it is critical for forecast users to appreciate current limitations and use a broad set of indicators to inform pandemic-related decision making.
Handle
https://boris-portal.unibe.ch/handle/20.500.12422/177244
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journal.pcbi.1011200.pdftextAdobe PDF4.44 MBAttribution (CC BY 4.0)publishedOpen
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