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Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation.

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cris.virtual.author-orcid0000-0002-1575-5225
cris.virtualsource.author-orcid53406b09-a1e8-4305-94d1-26d4ec613ac2
dc.contributor.authorBossé, Janine T
dc.contributor.authorLi, Yanwen
dc.contributor.authorCohen, Liza Miriam
dc.contributor.authorStegger, Marc
dc.contributor.authorAngen, Øystein
dc.contributor.authorLacouture, Sonia
dc.contributor.authorGottschalk, Marcelo
dc.contributor.authorLei, Liancheng
dc.contributor.authorKoene, Miriam
dc.contributor.authorKuhnert, Peter
dc.contributor.authorBandara, Aloka B
dc.contributor.authorInzana, Thomas J
dc.contributor.authorHolden, Matthew T G
dc.contributor.authorHarris, David
dc.contributor.authorOshota, Olusegun
dc.contributor.authorMaskell, Duncan J
dc.contributor.authorTucker, Alexander W
dc.contributor.authorWren, Brendan W
dc.contributor.authorRycroft, Andrew N
dc.contributor.authorLangford, Paul R
dc.date.accessioned2024-10-09T17:05:05Z
dc.date.available2024-10-09T17:05:05Z
dc.date.issued2021-11
dc.description.abstractWe report here the complete genome sequence of the widely studied Actinobacillus pleuropneumoniae serovar 8 reference strain 405, generated using the Pacific Biosciences (PacBio) RS II platform. Furthermore, we compared draft sequences generated by Illumina sequencing of six stocks of this strain, including the same original stock used to generate the PacBio sequence, held in different countries and found little genetic variation, with only three SNPs identified, all within the degS gene. However, sequences of two small plasmids, pARD3079 and p405tetH, detected by Illumina sequencing of the draft genomes were not identified in the PacBio sequence of the reference strain.
dc.description.numberOfPages7
dc.description.sponsorshipInstitut für Veterinärbakteriologie (IVB)
dc.identifier.doi10.48350/166759
dc.identifier.pmid34818145
dc.identifier.publisherDOI10.1099/mgen.0.000687
dc.identifier.urihttps://boris-portal.unibe.ch/handle/20.500.12422/68312
dc.language.isoen
dc.publisherMicrobiology Society
dc.relation.ispartofMicrobial genomics
dc.relation.issn2057-5858
dc.relation.organizationDCD5A442C1CCE17DE0405C82790C4DE2
dc.relation.organizationDCD5A442C494E17DE0405C82790C4DE2
dc.subjectActinobacillus pleuropneumoniae SNPs serovar 8 reference genome
dc.subject.ddc500 - Science::570 - Life sciences; biology
dc.subject.ddc600 - Technology::630 - Agriculture
dc.titleComplete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation.
dc.typearticle
dspace.entity.typePublication
dspace.file.typetext
oaire.citation.issue11
oaire.citation.volume7
oairecerif.author.affiliationInstitut für Veterinärbakteriologie (IVB)
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unibe.date.licenseChanged2022-03-09 09:51:48
unibe.description.ispublishedpub
unibe.eprints.legacyId166759
unibe.journal.abbrevTitleMicrob Genom
unibe.refereedTRUE
unibe.subtype.articlejournal

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