Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation.

BORIS DOI
Publisher DOI
PubMed ID
34818145
Description
We report here the complete genome sequence of the widely studied Actinobacillus pleuropneumoniae serovar 8 reference strain 405, generated using the Pacific Biosciences (PacBio) RS II platform. Furthermore, we compared draft sequences generated by Illumina sequencing of six stocks of this strain, including the same original stock used to generate the PacBio sequence, held in different countries and found little genetic variation, with only three SNPs identified, all within the degS gene. However, sequences of two small plasmids, pARD3079 and p405tetH, detected by Illumina sequencing of the draft genomes were not identified in the PacBio sequence of the reference strain.
Date of Publication
2021-11
Publication Type
Article
Subject(s)
500 - Science::570 - Life sciences; biology
600 - Technology::630 - Agriculture
Keyword(s)
Actinobacillus pleuropneumoniae SNPs serovar 8 reference genome
Language(s)
en
Contributor(s)
Bossé, Janine T
Li, Yanwen
Cohen, Liza Miriam
Stegger, Marc
Angen, Øystein
Lacouture, Sonia
Gottschalk, Marcelo
Lei, Liancheng
Koene, Miriam
Bandara, Aloka B
Inzana, Thomas J
Holden, Matthew T G
Harris, David
Oshota, Olusegun
Maskell, Duncan J
Tucker, Alexander W
Wren, Brendan W
Rycroft, Andrew N
Langford, Paul R
Additional Credits
Institut für Veterinärbakteriologie (IVB)
Series
Microbial genomics
Publisher
Microbiology Society
ISSN
2057-5858
Access(Rights)
open.access
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