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  3. Exploring Simple Drug Scaffolds from the Generated Database Chemical Space Reveals a Chiral Bicyclic Azepane with Potent Neuropharmacology.
 

Exploring Simple Drug Scaffolds from the Generated Database Chemical Space Reveals a Chiral Bicyclic Azepane with Potent Neuropharmacology.

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BORIS DOI
10.48620/88083
Date of Publication
May 2025
Publication Type
Article
Division/Institute

Department of Chemist...

Institut für Biochemi...

Institute of Biochemi...

DCBP Gruppe Prof. Rey...

Author
Carrel, Aline
Department of Chemistry, Biochemistry and Pharmaceutical Sciences (DCBP)
Yiannakas, Adonis
Institute of Biochemistry and Molecular Medicine (IBMM)
Roukens, Jaap-Jan
Institut für Biochemie und Molekulare Medizin, Gruppe Gertsch
Institute of Biochemistry and Molecular Medicine (IBMM)
Reynoso, Ines del Carmen
Institut für Biochemie und Molekulare Medizin, Gruppe Gertsch
Institute of Biochemistry and Molecular Medicine (IBMM)
Orsi, Markus
Thakkar, Amol
Department of Chemistry, Biochemistry and Pharmaceutical Sciences (DCBP)
Arus Pous, Josep
Pellegata, Daniele
Institute of Biochemistry and Molecular Medicine (IBMM)
Institut für Biochemie und Molekulare Medizin, Gruppe Gertsch
Gertsch, Jürg
Institute of Biochemistry and Molecular Medicine (IBMM)
Institut für Biochemie und Molekulare Medizin, Gruppe Gertsch
Reymond, Jean-Louisorcid-logo
DCBP Gruppe Prof. Reymond
Subject(s)

600 - Technology::610...

500 - Science::540 - ...

Series
Journal of Medicinal Chemistry
ISSN or ISBN (if monograph)
1520-4804
0022-2623
Publisher
American Chemical Society
Language
English
Publisher DOI
10.1021/acs.jmedchem.4c02549
PubMed ID
40274264
Description
To assess how much structural diversity remains unexploited in simple drug scaffolds, we investigated ring systems functionalized with amine handles. Starting from the ring systems database GDB-4c, we enumerated 1139 possible amines and diamines with up to two five-, six-, or seven-membered rings. From the 680 cases not listed in PubChem, we synthesized several unprecedented cis- and trans-fused azepanes and tested possible targets predicted using the polypharmacology browser PPB2. From this screening campaign, an N-benzylated azepane emerged as a potent inhibitor of monoamine transporters with some selectivity toward norepinephrine (NET, SLC6A2) and dopamine transporter (DAT, SLC6A3) inhibition (IC50 < 100 nM) in combination with σ-1R inhibition (IC50 ≈ 110 nM). The in vitro profile, favorable pharmacokinetic properties, and preliminary behavioral and metabolomic effects in mice suggest a potential of N-benzylated bicyclic azepanes to target neuropsychiatric disorders. These experiments highlight the potential of simple but still unexplored scaffolds for drug discovery.
Handle
https://boris-portal.unibe.ch/handle/20.500.12422/210228
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