Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection

Kouyos, Roger DRoger DKouyosvon Wyl, ViktorViktorvon WylYerly, SabineSabineYerlyBöni, JürgJürgBöniRieder, PhilipPhilipRiederJoos, BedaBedaJoosTaffé, PatrickPatrickTafféShah, CyrilCyrilShahBürgisser, PhilippePhilippeBürgisserKlimkait, ThomasThomasKlimkaitWeber, RainerRainerWeberHirschel, BernardBernardHirschelCavassini, MatthiasMatthiasCavassiniRauch, AndriAndriRauch0000-0001-5297-6062Battegay, ManuelManuelBattegayVernazza, Pietro LPietro LVernazzaBernasconi, EnosEnosBernasconiLedergerber, BrunoBrunoLedergerberBonhoeffer, SebastianSebastianBonhoefferGünthard, Huldrych FHuldrych FGünthardSwiss HIV Cohort, StudyStudySwiss HIV Cohort2024-10-112024-10-112011https://boris-portal.unibe.ch/handle/20.500.12422/78699The time passed since the infection of a human immunodeficiency virus (HIV)-infected individual (the age of infection) is an important but often only poorly known quantity. We assessed whether the fraction of ambiguous nucleotides obtained from bulk sequencing as done for genotypic resistance testing can serve as a proxy of this parameter.enAmbiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infectionarticle10.7892/boris.82732122077000028667780002010.1093/cid/ciq164