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  3. Entropy Guided Unsupervised Domain Adaptation for Cross-Center Hip Cartilage Segmentation from MRI
 

Entropy Guided Unsupervised Domain Adaptation for Cross-Center Hip Cartilage Segmentation from MRI

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BORIS DOI
10.48350/161451
Official URL
https://www.dsl.unibe.ch/events/bdsd2021/
Publisher DOI
10.5281/zenodo.4767469
Description
Deep Convolutional Neural Networks have shown great success in various automatic medical image segmentation tasks, but testing on domain-shifted datasets (e.g. images obtained from different centers) can lead to severe performance losses. Our aim is to train a network which can realise cross-center hip MRI cartilage segmentation, without the need for additional time-consuming annotations on the target domain. In this abstract, we propose an entropy-guided unsupervised domain adaptation method and successfully demonstrate its application in the task of cross-center segmentation of the MRI hip cartilage, which is shown in below figure. Specifically, we first trained our model with supervised loss on the source domain, which enables low-entropy predictions on source-like images. Two discriminators were then used to minimize the gap between source and target domain with respect to the alignment of feature and entropy distribution. Compared to the results without adaptation with an average Dice of 46.46%, our method reports an average Dice value of 72.82%, which is quite close to the upper bound of 81.3% when the target annotations are directly included for training.
Date of Publication
2021-04-23
Publication Type
Conference Item
Subject(s)
600 Technology > 610 Medicine & health
Language(s)
en
Contributor(s)
Zeng, Guodongorcid-logo
School of Biomedical and Precision Engineering (SBPE) University of Bern
sitem Zentrum für Translationale Medizin und Biomedizinisches Unternehmertum
Schmaranzer, Florian
Universitätsinstitut für Diagnostische und Interventionelle Neuroradiologie
Lerch, Tillorcid-logo
Universitätsinstitut für Diagnostische, Interventionelle und Pädiatrische Radiologie
Boschung, Adam
Universitätsklinik für Orthopädische Chirurgie und Traumatologie
Zheng, Guoyan
Burger, Jürgen
School of Biomedical and Precision Engineering (SBPE) University of Bern
sitem Zentrum für Translationale Medizin und Biomedizinisches Unternehmertum
Gerber, Kateorcid-logo
School of Biomedical and Precision Engineering (SBPE) University of Bern
sitem Zentrum für Translationale Medizin und Biomedizinisches Unternehmertum
Tannast, Moritz
Siebenrock, Klaus-Arno
Universitätsklinik für Orthopädische Chirurgie und Traumatologie
Kim, Young-Jo
Novais, Eduardo
Gerber, Nicolasorcid-logo
School of Biomedical and Precision Engineering (SBPE) University of Bern
sitem Zentrum für Translationale Medizin und Biomedizinisches Unternehmertum
Additional Credits
School of Biomedical and Precision Engineering (SBPE) University of Bern
Universitätsklinik für Orthopädische Chirurgie und Traumatologie
Universitätsinstitut für Diagnostische und Interventionelle Neuroradiologie
Universitätsinstitut für Diagnostische, Interventionelle und Pädiatrische Radiologie
Title of Event
Bern Data Science Day 2021
Related URL(s)
https://zenodo.org/record/4767469
Access(Rights)
open.access
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