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  3. Crowdsourcing enables robust cell annotation for breast cancer pathology.
 

Crowdsourcing enables robust cell annotation for breast cancer pathology.

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BORIS DOI
10.48620/97670
Publisher DOI
10.1038/s41598-026-50544-9
PubMed ID
42115242
Description
The tumor microenvironment (TME) contains important morphological and molecular cues that help determine prognosis and therapeutic responses. Deep learning models can assist pathologists in assessing such biomarkers. However, generating high-quality annotations for computational pathology remains a significant bottleneck due to the level of expertise and considerable time required for fine-grained labeling. In this study, we evaluate the feasibility of using non-expert crowdsourcing for cell annotation in hematoxylin and eosin (H&E) samples of breast cancer tissue. Unlike prior work, performance assessment was based on high-fidelity ground-truth labels derived from multiplexed immunofluorescence using CODEX data, allowing for accurate benchmarking of both experts and non-experts. We collected cell annotations from experts, semi-experts, and non-experts through Tilly, a gamified annotation application designed to train and engage users in identifying major cell types within the TME. Overall, our results show that non-expert crowdsourcing is a scalable and effective strategy for generating training data for the classification of major cell types in H&E images: tumor cells, lymphocytes, and fibroblasts. Moreover, combining large, crowdsourced datasets with smaller, high-quality subsets annotated using spatial proteomics may offer a practical annotation approach to develop more robust models while minimizing biases.
Date of Publication
2026-05-11
Publication Type
Article
Subject(s)
600 Technology > 610 Medicine & health
Language(s)
en
Contributor(s)
Klöckner, Pascal
Clinic of Radiation Oncology
Cesur, Melis Erdal
Rooij, Bart de
Ameziane, Zainab
Iritas, Idris
Harkes, Rolf
Hajizadeh, Siamak
Aloglu, Ibrahim
Sanders, Joyce
Guimaraes, Marcos da Silva
Meijer, Sybren Lodewijk
Bidarra, Rafael
Hoeve, Jelle Ten
Pels, Laurens
Oliveira, Sara Pires
Horlings, Hugo Mark
Additional Credits
Clinic of Radiation Oncology
Series
Scientific Reports
Publisher
Nature Research
ISSN
2045-2322
Access(Rights)
open.access
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