Publication:
The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Simple item page
cris.virtual.author-orcid0000-0002-1106-6123
cris.virtual.author-orcid0000-0001-5722-9445
cris.virtual.author-orcid0000-0002-3437-4639
cris.virtualsource.author-orcid1b54a387-db97-41f4-bae6-ad365f708868
cris.virtualsource.author-orcida124746e-28d0-4c6b-b224-aa11f4e7db36
cris.virtualsource.author-orcidce055f7f-bddd-4bb1-8f0b-e1049f4c0ea8
datacite.rightsopen.access
dc.contributor.authorNeves, Aitana
dc.contributor.authorWalther, Daniel
dc.contributor.authorMartin-Campos, Trinidad
dc.contributor.authorBarbie, Valerie
dc.contributor.authorBertelli, Claire
dc.contributor.authorBlanc, Dominique
dc.contributor.authorBouchet, Gérard
dc.contributor.authorErard, Frédéric
dc.contributor.authorGreub, Gilbert
dc.contributor.authorHirsch, Hans H
dc.contributor.authorHuber, Michael
dc.contributor.authorKaiser, Laurent
dc.contributor.authorLeib, Stephen
dc.contributor.authorLeuzinger, Karoline
dc.contributor.authorLazarevic, Vladimir
dc.contributor.authorMäusezahl, Mirjam
dc.contributor.authorMolina, Jorge
dc.contributor.authorNeher, Richard A
dc.contributor.authorPerreten, Vincent
dc.contributor.authorRamette, Alban Nicolas
dc.contributor.authorRoloff, Tim
dc.contributor.authorSchrenzel, Jacques
dc.contributor.authorSeth-Smith, Helena M B
dc.contributor.authorStephan, Roger
dc.contributor.authorTerumalai, Dillenn
dc.contributor.authorWegner, Fanny
dc.contributor.authorEgli, Adrian
dc.date.accessioned2025-01-08T21:27:55Z
dc.date.available2025-01-08T21:27:55Z
dc.date.issued2023-05
dc.description.abstractThe Swiss Pathogen Surveillance Platform (SPSP) is a shared secure surveillance platform between human and veterinary medicine, to also include environmental and foodborne isolates. It enables rapid and detailed transmission monitoring and outbreak surveillance of pathogens using whole genome sequencing data and associated metadata. It features controlled data access, complex dynamic queries, dedicated dashboards and automated data sharing with international repositories, providing actionable results for public health and the vision to improve societal well-being and health.
dc.description.sponsorshipInstitut für Infektionskrankheiten (IFIK) - Forschung
dc.description.sponsorshipInstitut für Veterinärbakteriologie (IVB)
dc.identifier.doi10.48350/182522
dc.identifier.pmid37171846
dc.identifier.publisherDOI10.1099/mgen.0.001001
dc.identifier.urihttps://boris-portal.unibe.ch/handle/20.500.12422/202291
dc.language.isoen
dc.publisherMicrobiology Society
dc.relation.ispartofMicrobial genomics
dc.relation.issn2057-5858
dc.relation.organizationDCD5A442C494E17DE0405C82790C4DE2
dc.relation.organizationDCD5A442C208E17DE0405C82790C4DE2
dc.relation.organizationDCD5A442BA19E17DE0405C82790C4DE2
dc.relation.organizationDCD5A442BD12E17DE0405C82790C4DE2
dc.relation.organizationDCD5A442C1CCE17DE0405C82790C4DE2
dc.relation.organizationDCD5A442C494E17DE0405C82790C4DE2
dc.subjectantibiotic resistance bacteria bioinformatics database epidemiology fungi molecular surveillance outbreaks research sequencing typing virulence virus
dc.subject.ddc600 - Technology::630 - Agriculture
dc.subject.ddc500 - Science::570 - Life sciences; biology
dc.subject.ddc600 - Technology::610 - Medicine & health
dc.titleThe Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.
dc.typearticle
dspace.entity.typePublication
dspace.file.typetext
oaire.citation.issue5
oaire.citation.volume9
oairecerif.author.affiliationInstitut für Infektionskrankheiten (IFIK) - Forschung
oairecerif.author.affiliationInstitut für Veterinärbakteriologie (IVB)
oairecerif.author.affiliationInstitut für Infektionskrankheiten (IFIK) - Forschung
oairecerif.author.affiliation2Institut für Veterinärbakteriologie (IVB) - MolEpi & Infektiologie
oairecerif.author.affiliation2Institut für Infektionskrankheiten (IFIK)
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.date.licenseChanged2023-05-16 13:29:20
unibe.description.ispublishedpub
unibe.eprints.legacyId182522
unibe.journal.abbrevTitleMicrob Genom
unibe.refereedtrue
unibe.subtype.articlereview

Files

Original bundle
Now showing 1 - 1 of 1
Name:
mgen001001.pdf
Size:
2.91 MB
Format:
Adobe Portable Document Format
File Type:
text
License:
https://creativecommons.org/licenses/by/4.0
Content:
published
Download

Collections

Publications