Publication:
Airspace Diameter Map-A Quantitative Measurement of All Pulmonary Airspaces to Characterize Structural Lung Diseases.

cris.virtual.author-orcid0000-0003-3388-9187
cris.virtual.author-orcid0000-0003-4025-3961
cris.virtualsource.author-orcid9b27a6a9-adec-4c8b-875c-de3cc85c2638
cris.virtualsource.author-orcid86c8a37e-99a6-4ddf-a105-8e2c548d565e
cris.virtualsource.author-orcid9bfd1396-417c-4e5a-b940-bad9f8246435
cris.virtualsource.author-orcid07c63486-ee3a-4e33-8520-eaaadbf8dc8b
cris.virtualsource.author-orcid36ac9000-546f-4dd0-af34-f5f15be8bfbe
datacite.rightsopen.access
dc.contributor.authorBlaskovic, Sanja
dc.contributor.authorAnagnostopoulou, Pinelopi
dc.contributor.authorBorisova, Elena
dc.contributor.authorSchittny, Dominik Christian
dc.contributor.authorDonati, Yves
dc.contributor.authorHaberthür, David
dc.contributor.authorZhou-Suckow, Zhe
dc.contributor.authorMall, Marcus A
dc.contributor.authorSchlepütz, Christian M
dc.contributor.authorStampanoni, Marco
dc.contributor.authorBarazzone-Argiroffo, Constance
dc.contributor.authorSchittny, Johannes
dc.date.accessioned2024-10-25T18:19:17Z
dc.date.available2024-10-25T18:19:17Z
dc.date.issued2023-09-28
dc.description.abstract(1) Background: Stereological estimations significantly contributed to our understanding of lung anatomy and physiology. Taking stereology fully 3-dimensional facilitates the estimation of novel parameters. (2) Methods: We developed a protocol for the analysis of all airspaces of an entire lung. It includes (i) high-resolution synchrotron radiation-based X-ray tomographic microscopy, (ii) image segmentation using the free machine-learning tool Ilastik and ImageJ, and (iii) calculation of the airspace diameter distribution using a diameter map function. To evaluate the new pipeline, lungs from adult mice with cystic fibrosis (CF)-like lung disease (βENaC-transgenic mice) or mice with elastase-induced emphysema were compared to healthy controls. (3) Results: We were able to show the distribution of airspace diameters throughout the entire lung, as well as separately for the conducting airways and the gas exchange area. In the pathobiological context, we observed an irregular widening of parenchymal airspaces in mice with CF-like lung disease and elastase-induced emphysema. Comparable results were obtained when analyzing lungs imaged with μCT, sugges-ting that our pipeline is applicable to different kinds of imaging modalities. (4) Conclusions: We conclude that the airspace diameter map is well suited for a detailed analysis of unevenly distri-buted structural alterations in chronic muco-obstructive lung diseases such as cystic fibrosis and COPD.
dc.description.sponsorshipInstitut für Anatomie
dc.description.sponsorshipInstitut für Anatomie - Topographische & Klinische Anatomie
dc.identifier.doi10.48350/187179
dc.identifier.pmid37830589
dc.identifier.publisherDOI10.3390/cells12192375
dc.identifier.urihttps://boris-portal.unibe.ch/handle/20.500.12422/170660
dc.language.isoen
dc.publisherMDPI
dc.relation.ispartofCells
dc.relation.issn2073-4409
dc.relation.organization5EBDFFD4994748B4B44FD17D5E463CFB
dc.relation.organizationDCD5A442BCD7E17DE0405C82790C4DE2
dc.relation.organizationDCD5A442BD6CE17DE0405C82790C4DE2
dc.subjectX-ray tomographic microscopy artificial intelligence cystic fibrosis image analysis lung disease micro-computed X-ray tomography/micro-CT pulmonary emphysema stereology
dc.subject.ddc500 - Science::570 - Life sciences; biology
dc.subject.ddc600 - Technology::610 - Medicine & health
dc.titleAirspace Diameter Map-A Quantitative Measurement of All Pulmonary Airspaces to Characterize Structural Lung Diseases.
dc.typearticle
dspace.entity.typePublication
dspace.file.typetext
oaire.citation.issue19
oaire.citation.volume12
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie - Topographische & Klinische Anatomie
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie - Topographische & Klinische Anatomie
oairecerif.author.affiliationInstitut für Anatomie - Topographische & Klinische Anatomie
oairecerif.author.affiliation2Institut für Anatomie - MicroCT
oairecerif.author.affiliation2Institut für Anatomie - Lungenbiologie
oairecerif.author.affiliation3Institut für Anatomie
oairecerif.author.affiliation3Institut für Anatomie
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unibe.date.licenseChanged2023-10-16 15:47:19
unibe.description.ispublishedpub
unibe.eprints.legacyId187179
unibe.refereedtrue
unibe.subtype.articlejournal

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