Publication:
Zebrafish Caudal Fin Angiogenesis Assay-Advanced Quantitative Assessment Including 3-Way Correlative Microscopy.

cris.virtual.author-orcid0000-0003-3880-4437
cris.virtual.author-orcid0000-0002-5062-1169
cris.virtualsource.author-orcid6b9f7e28-8a66-49ee-abac-5a92d89b810b
cris.virtualsource.author-orcidd9a854b7-7ad8-4a88-99ba-89c7303e0c26
cris.virtualsource.author-orcid186ae18e-3904-4a62-b7ea-502edd29f3bb
cris.virtualsource.author-orcid103af363-413d-4cc3-b488-1ce4a59686be
cris.virtualsource.author-orcid901e78b3-6d28-46ea-a050-5d61efa5328f
cris.virtualsource.author-orcidaeba9e0a-b3a9-4d7a-8207-e34ae1262581
cris.virtualsource.author-orcid50f55964-7ff8-4bc0-8549-9919a3cbee93
dc.contributor.authorHlushchuk, Ruslan
dc.contributor.authorBrönnimann, Daniel
dc.contributor.authorCorrea Shokiche, Carlos
dc.contributor.authorSchaad, Laura
dc.contributor.authorTriet, Ramona
dc.contributor.authorJazwinska, Anna
dc.contributor.authorTschanz, Stefan A.
dc.contributor.authorDjonov, Valentin Georgiev
dc.date.accessioned2024-10-24T17:25:44Z
dc.date.available2024-10-24T17:25:44Z
dc.date.issued2016
dc.description.abstractBACKGROUND Researchers evaluating angiomodulating compounds as a part of scientific projects or pre-clinical studies are often confronted with limitations of applied animal models. The rough and insufficient early-stage compound assessment without reliable quantification of the vascular response counts, at least partially, to the low transition rate to clinics. OBJECTIVE To establish an advanced, rapid and cost-effective angiogenesis assay for the precise and sensitive assessment of angiomodulating compounds using zebrafish caudal fin regeneration. It should provide information regarding the angiogenic mechanisms involved and should include qualitative and quantitative data of drug effects in a non-biased and time-efficient way. APPROACH & RESULTS Basic vascular parameters (total regenerated area, vascular projection area, contour length, vessel area density) were extracted from in vivo fluorescence microscopy images using a stereological approach. Skeletonization of the vasculature by our custom-made software Skelios provided additional parameters including "graph energy" and "distance to farthest node". The latter gave important insights into the complexity, connectivity and maturation status of the regenerating vascular network. The employment of a reference point (vascular parameters prior amputation) is unique for the model and crucial for a proper assessment. Additionally, the assay provides exceptional possibilities for correlative microscopy by combining in vivo-imaging and morphological investigation of the area of interest. The 3-way correlative microscopy links the dynamic changes in vivo with their structural substrate at the subcellular level. CONCLUSIONS The improved zebrafish fin regeneration model with advanced quantitative analysis and optional 3-way correlative morphology is a promising in vivo angiogenesis assay, well-suitable for basic research and preclinical investigations.
dc.description.sponsorshipInstitut für Anatomie
dc.identifier.doi10.7892/boris.82614
dc.identifier.pmid26950851
dc.identifier.publisherDOI10.1371/journal.pone.0149281
dc.identifier.urihttps://boris-portal.unibe.ch/handle/20.500.12422/142250
dc.language.isoen
dc.publisherPublic Library of Science
dc.relation.ispartofPLoS ONE
dc.relation.issn1932-6203
dc.relation.organizationDCD5A442BCD7E17DE0405C82790C4DE2
dc.relation.organization5EBDFFD4994748B4B44FD17D5E463CFB
dc.relation.schoolDCD5A442C27BE17DE0405C82790C4DE2
dc.subject.ddc600 - Technology::610 - Medicine & health
dc.titleZebrafish Caudal Fin Angiogenesis Assay-Advanced Quantitative Assessment Including 3-Way Correlative Microscopy.
dc.typearticle
dspace.entity.typePublication
dspace.file.typetext
oaire.citation.issue3
oaire.citation.startPagee0149281
oaire.citation.volume11
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie
oairecerif.author.affiliationInstitut für Anatomie
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.contributor.rolecreator
unibe.description.ispublishedpub
unibe.eprints.legacyId82614
unibe.journal.abbrevTitlePLOS ONE
unibe.refereedTRUE
unibe.subtype.articlejournal

Files

Original bundle
Now showing 1 - 1 of 1
Name:
asset.pdf
Size:
3.04 MB
Format:
Adobe Portable Document Format
File Type:
text
License:
https://creativecommons.org/licenses/by/4.0
Content:
published

Collections