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  3. Local and global feature aggregation for accurate epithelial cell classification using graph attention mechanisms in histopathology images
 

Local and global feature aggregation for accurate epithelial cell classification using graph attention mechanisms in histopathology images

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BORIS DOI
10.48350/185210
Description
In digital pathology, cell-level tissue analyses are widely used to better understand tissue
composition and structure. Publicly available datasets and models for cell detection and
classification in colorectal cancer exist but lack the differentiation of normal and malignant
epithelial cells that are important to perform prior to any downstream cell-based analysis.
This classification task is particularly difficult due to the high intra-class variability of
neoplastic cells. To tackle this, we present here a new method that uses graph-based node
classification to take advantage of both local cell features and global tissue architecture to
perform accurate epithelial cell classification. The proposed method demonstrated excellent
performance on F1 score (PanNuke: 1.0, TCGA: 0.98) and performed significantly better
than conventional computer vision methods (PanNuke: 0.99, TCGA: 0.92).
Date of Publication
2023-04-28
Publication Type
Conference Item
Subject(s)
500 Science > 570 Life sciences; biology
600 Technology > 610 Medicine & health
000 Computer science, knowledge & systems
600 Technology > 620 Engineering
Language(s)
en
Contributor(s)
Frei, Ana Leni
Institut für Gewebemedizin und Pathologie
Institut für Gewebemedizin und Pathologie - Digitale Pathologie
Khan, Amjadorcid-logo
Institut für Gewebemedizin und Pathologie - Digitale Pathologie
Institut für Gewebemedizin und Pathologie
Studer, Linda
Institut für Gewebemedizin und Pathologie
Zens, Philipp Immanuel
Institut für Gewebemedizin und Pathologie
Lugli, Alessandroorcid-logo
Institut für Gewebemedizin und Pathologie - Klinische Pathologie
Institut für Gewebemedizin und Pathologie
Fischer, Andreas
Zlobec, Intiorcid-logo
Institut für Gewebemedizin und Pathologie
Institut für Gewebemedizin und Pathologie - Digitale Pathologie
Additional Credits
Institut für Gewebemedizin und Pathologie
Institut für Gewebemedizin und Pathologie - Digitale Pathologie
Institut für Gewebemedizin und Pathologie - Klinische Pathologie
Title of Event
Medical Imaging with deep Learning 2023
Access(Rights)
open.access
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