An empirical study on KDIGO-defined acute kidney injury prediction in the intensive care unit.
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BORIS DOI
Date of Publication
June 28, 2024
Publication Type
Article
Division/Institute
Author
Lyu, Xinrui | |
Fan, Bowen | |
Hüser, Matthias | |
Hartout, Philip | |
Gumbsch, Thomas | |
Merz, Tobias M | |
Rätsch, Gunnar | |
Borgwardt, Karsten |
Subject(s)
Series
Bioinformatics
ISSN or ISBN (if monograph)
1367-4811
Publisher
Oxford University Press
Language
English
Publisher DOI
PubMed ID
38940165
Description
MOTIVATION
Acute kidney injury (AKI) is a syndrome that affects a large fraction of all critically ill patients, and early diagnosis to receive adequate treatment is as imperative as it is challenging to make early. Consequently, machine learning approaches have been developed to predict AKI ahead of time. However, the prevalence of AKI is often underestimated in state-of-the-art approaches, as they rely on an AKI event annotation solely based on creatinine, ignoring urine output.
UNLABELLED
We construct and evaluate early warning systems for AKI in a multi-disciplinary ICU setting, using the complete KDIGO definition of AKI. We propose several variants of gradient-boosted decision tree (GBDT)-based models, including a novel time-stacking based approach. A state-of-the-art LSTM-based model previously proposed for AKI prediction is used as a comparison, which was not specifically evaluated in ICU settings yet.
RESULTS
We find that optimal performance is achieved by using GBDT with the time-based stacking technique (AUPRC = 65.7%, compared with the LSTM-based model's AUPRC = 62.6%), which is motivated by the high relevance of time since ICU admission for this task. Both models show mildly reduced performance in the limited training data setting, perform fairly across different subcohorts, and exhibit no issues in gender transfer.
UNLABELLED
Following the official KDIGO definition substantially increases the number of annotated AKI events. In our study GBDTs outperform LSTM models for AKI prediction. Generally, we find that both model types are robust in a variety of challenging settings arising for ICU data.
AVAILABILITY AND IMPLEMENTATION
The code to reproduce the findings of our manuscript can be found at: https://github.com/ratschlab/AKI-EWS.
Acute kidney injury (AKI) is a syndrome that affects a large fraction of all critically ill patients, and early diagnosis to receive adequate treatment is as imperative as it is challenging to make early. Consequently, machine learning approaches have been developed to predict AKI ahead of time. However, the prevalence of AKI is often underestimated in state-of-the-art approaches, as they rely on an AKI event annotation solely based on creatinine, ignoring urine output.
UNLABELLED
We construct and evaluate early warning systems for AKI in a multi-disciplinary ICU setting, using the complete KDIGO definition of AKI. We propose several variants of gradient-boosted decision tree (GBDT)-based models, including a novel time-stacking based approach. A state-of-the-art LSTM-based model previously proposed for AKI prediction is used as a comparison, which was not specifically evaluated in ICU settings yet.
RESULTS
We find that optimal performance is achieved by using GBDT with the time-based stacking technique (AUPRC = 65.7%, compared with the LSTM-based model's AUPRC = 62.6%), which is motivated by the high relevance of time since ICU admission for this task. Both models show mildly reduced performance in the limited training data setting, perform fairly across different subcohorts, and exhibit no issues in gender transfer.
UNLABELLED
Following the official KDIGO definition substantially increases the number of annotated AKI events. In our study GBDTs outperform LSTM models for AKI prediction. Generally, we find that both model types are robust in a variety of challenging settings arising for ICU data.
AVAILABILITY AND IMPLEMENTATION
The code to reproduce the findings of our manuscript can be found at: https://github.com/ratschlab/AKI-EWS.
File(s)
File | File Type | Format | Size | License | Publisher/Copright statement | Content | |
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btae212.pdf | text | Adobe PDF | 1.74 MB | published |